About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33241132_33241767_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33241132 - 33241767
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTGGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CCTTCTCTAACT
Flanking Amino Acid:
QNYAKVIKEHGTDFFDKDGV
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
79.5
36.8
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
81.3
0.71
0.9
80.6
31.4
Minor 5ss
42.2
-0.9
3.4
56.2
48
Minor BPS
65.8
0.57
1.7
80.09
42.2

Associated Gene:

Gene:
ABRAXAS2
Ensembl Gene ID:
ENSAPLG00000014971
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015622
33231663 - 33247528
15866