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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33241853_33243825_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33241853 - 33243825
Intron Length:
1973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATCTTAGTAATT
Flanking Amino Acid:
VYNALQEKVQAVCIDVEKSE
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1.1
74.6
37.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80.5
0.69
0.8
73.8
36.9
Minor 5ss
39.5
-1.2
3.1
53.7
43.5
Minor BPS
48.2
-0
2.2
70.57
41

Associated Gene:

Gene:
ABRAXAS2
Ensembl Gene ID:
ENSAPLG00000014971
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015622
33231663 - 33247528
15866