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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3326320_3328148_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3326320 - 3328148
Intron Length:
1829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAA
U12 Branch Point Sequence:
TTGCTGGTAAAT
Flanking Amino Acid:
PDIRHNWGEPMHWDFDMYIR
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1
75.8
40
Major BPS
60.1
0.25
1.3
61.7
43.1
Major PPT
82.8
0.74
0.7
81.3
30.8
Minor 5ss
37.6
-1.4
3.1
50.5
45.5
Minor BPS
42.3
-0.5
2.5
65.83
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015152
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015798
3325407 - 3329098
3692