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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33265673_33279710_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
33265673 - 33279710
Intron Length:
14038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTGTTTACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
80.7
34.7
Major BPS
100
1.24
0.5
100
0
Major PPT
86.4
0.82
0.8
80.4
36.6
Minor 5ss
49.9
-0
2.8
73.7
42.8
Minor BPS
52.6
0.08
2.3
72.91
38.8

Associated Gene:

Gene:
ZRANB1
Ensembl Gene ID:
ENSAPLG00000014747
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019847
33265380 - 33301708
36329