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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33281402_33289331_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33281402 - 33289331
Intron Length:
7930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
AATTATTTACTC
Flanking Amino Acid:
TDWLFLNACVGVVEGDLAAV
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
76.3
0.59
0.8
66.5
35
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
51.3
0.02
1.7
62.64
37

Associated Gene:

Gene:
ZRANB1
Ensembl Gene ID:
ENSAPLG00000014747
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015384
33276691 - 33301708
25018
ENSAPLT00000046683
33269444 - 33301708
32265
ENSAPLT00000019847
33265380 - 33301708
36329