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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3328249_3328739_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3328249 - 3328739
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCTTG
5'SS Class:
major
3'SS Sequence:
CGGTTTGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
TCTTGGCTGATT
Flanking Amino Acid:
DYQPYPDDGLGYGDYPMLPK
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
65.8
42.7
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
70.2
0.46
1
63.8
41.7
Minor 5ss
41.6
-0.9
3
47.2
48.2
Minor BPS
42.5
-0.5
2.6
67.15
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015152
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015798
3325407 - 3329098
3692