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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33289520_33291116_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33289520 - 33291116
Intron Length:
1597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAC
U12 Branch Point Sequence:
AGTGCAGTAACT
Flanking Amino Acid:
QDMLAILLTEVSQHAAKCIP
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
63.2
0.33
1
63.6
30.5
Major PPT
78.4
0.64
1
69.2
46.1
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
48.3
-0
2.3
72.4
44.1

Associated Gene:

Gene:
ZRANB1
Ensembl Gene ID:
ENSAPLG00000014747
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019847
33265380 - 33301708
36329
ENSAPLT00000015384
33276691 - 33301708
25018
ENSAPLT00000046683
33269444 - 33301708
32265