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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33292767_33293339_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33292767 - 33293339
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCATATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AGATTTTTAAGA
Flanking Amino Acid:
DEVLDRDVQKELEEESPIIN
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77
0.61
0.9
70.2
39.7
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
56.8
0.21
1.6
62.67
37.6

Associated Gene:

Gene:
ZRANB1
Ensembl Gene ID:
ENSAPLG00000014747
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019847
33265380 - 33301708
36329
ENSAPLT00000015384
33276691 - 33301708
25018
ENSAPLT00000046683
33269444 - 33301708
32265