About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33293539_33296225_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33293539 - 33296225
Intron Length:
2687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCCATGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTGTCTTCACC
Flanking Amino Acid:
LHDSLHDCSHWFYTRWKEWE
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
77.5
0.68
1
79.6
33
Major PPT
71.4
0.48
0.9
68.7
36.9
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
64.1
0.43
1.9
77.35
39.1

Associated Gene:

Gene:
ZRANB1
Ensembl Gene ID:
ENSAPLG00000014747
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015384
33276691 - 33301708
25018
ENSAPLT00000046683
33269444 - 33301708
32265
ENSAPLT00000019847
33265380 - 33301708
36329