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Intron Name: Anas_platyrhynchos_platyrhynchos_6_3329512_3330381_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3329512 - 3330381

Intron Length:

870

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGCGGCGG

5'SS Class:

major

3'SS Sequence:

TGTTTTTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCAAAA

U12 Branch Point Sequence:

GGTCCTTGAATC

Flanking Amino Acid:

PRAEELIENEEPVVLTDTNL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

1.1

51.5

46.7

Major BPS

68.1

0.45

73.5

28.6

Major PPT

88.6

0.87

0.7

81.3

36.4

Minor 5ss

23.6

-3

3.2

29.6

43.2

Minor BPS

56.4

0.18

1.4

62.56

36.4

Associated Gene:

Gene:

HIF1AN

Ensembl Gene ID:

ENSAPLG00000015134

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015773

3329338 - 3335626

6289