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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33296347_33297212_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33296347 - 33297212
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTGGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCCTTTTCAAAT
Flanking Amino Acid:
WAFILSLASQPGASLEQTHI
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71
0.47
1.1
65.7
44.8
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
53
0.17
1.6
68.37
43

Associated Gene:

Gene:
ZRANB1
Ensembl Gene ID:
ENSAPLG00000014747
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046683
33269444 - 33301708
32265
ENSAPLT00000019847
33265380 - 33301708
36329
ENSAPLT00000015384
33276691 - 33301708
25018