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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33300574_33301489_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33300574 - 33301489
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCCCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCGTTCTCAACG
Flanking Amino Acid:
LHIHFLSAQEIGNEEQQEKL
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
63.5
0.3
0.9
63.2
25.4
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
60.8
0.2
1.7
62.85
45.2

Associated Gene:

Gene:
ZRANB1
Ensembl Gene ID:
ENSAPLG00000014747
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015384
33276691 - 33301708
25018
ENSAPLT00000046683
33269444 - 33301708
32265
ENSAPLT00000019847
33265380 - 33301708
36329