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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3330633_3331384_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3330633 - 3331384
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGGGAAAATACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TAACATTTGATT
Flanking Amino Acid:
QEIQQKGSAERLYLQQTLND
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
54
0.09
1.1
44.5
44.8
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
51.9
0.14
1.5
67.03
37.5

Associated Gene:

Gene:
HIF1AN
Ensembl Gene ID:
ENSAPLG00000015134
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015773
3329338 - 3335626
6289