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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33309351_33309868_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33309351 - 33309868
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCTGCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CACCGATTAATT
Flanking Amino Acid:
ALDVHESEPFSFAQGPLKDA
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.3
37.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.1
0.43
0.9
64.1
31
Minor 5ss
32
-2.1
3.3
42.6
44.4
Minor BPS
46
-0.2
2
59.43
44

Associated Gene:

Gene:
CTBP2
Ensembl Gene ID:
ENSAPLG00000014447
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015103
33307087 - 33353159
46073