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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33314060_33352999_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33314060 - 33352999
Intron Length:
38940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTAAAA
U12 Branch Point Sequence:
TCAGGTGTAAAA
Flanking Amino Acid:
KRQRLDRICEGIRPQIMNGP
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
58
0.2
1.2
65.3
38.6
Major PPT
79.7
0.67
0.8
73.3
31.7
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
39.4
-0.8
2.3
48.34
42.6

Associated Gene:

Gene:
CTBP2
Ensembl Gene ID:
ENSAPLG00000014447
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015103
33307087 - 33353159
46073