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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3331534_3333246_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3331534 - 3333246
Intron Length:
1713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTATCC
Flanking Amino Acid:
TSNLLLIGMEGNVTPAHYDE
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.04
0.8
79.7
35.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74.7
0.56
0.8
70.2
29.6
Minor 5ss
33
-1.9
3.2
43.9
43.9
Minor BPS
53.3
0.08
2.2
75.51
40.9

Associated Gene:

Gene:
HIF1AN
Ensembl Gene ID:
ENSAPLG00000015134
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015773
3329338 - 3335626
6289