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Intron Name: Anas_platyrhynchos_platyrhynchos_6_3333393_3333889_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3333393 - 3333889

Intron Length:

497

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGTA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCGTGTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

AGTTTCTTACTC

Flanking Amino Acid:

VHHPCDRQSQVDFDNPDYEK

Intron Amino Acid Position:

241

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

0.8

80.3

26.9

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

72.8

0.51

73.6

Minor 5ss

28.6

-2.5

3.4

37.8

Minor BPS

61.9

0.35

1.6

68.84

36.9

Associated Gene:

Gene:

HIF1AN

Ensembl Gene ID:

ENSAPLG00000015134

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015773

3329338 - 3335626

6289