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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3333997_3334387_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3333997 - 3334387
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AGTTTCTGATTC
Flanking Amino Acid:
PGDVLYIPMYWWHHIESLLN
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.2
37.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
74.7
0.56
1
69.2
36.9
Minor 5ss
37.2
-1.4
3
46.5
42.8
Minor BPS
50.5
-0
1.7
62.08
37.3

Associated Gene:

Gene:
HIF1AN
Ensembl Gene ID:
ENSAPLG00000015134
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015773
3329338 - 3335626
6289