Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3334452_3334674_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3334452 - 3334674

Intron Length:

223

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TTTGGTATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTCAG

U12 Branch Point Sequence:

AATTCAGTAAGC

Flanking Amino Acid:

ITITVNFWYKGAPTPKRIEY

Intron Amino Acid Position:

298

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.7

80.2

27.1

Major BPS

59.4

0.23

1.5

69.4

37.7

Major PPT

81.4

0.71

0.9

78.1

40.1

Minor 5ss

27.5

-2.6

32.5

42.3

Minor BPS

46.2

-0.3

2.4

63.22

41.9

Associated Gene:

Gene:

HIF1AN

Ensembl Gene ID:

ENSAPLG00000015134

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015773

3329338 - 3335626

6289