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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3334786_3335581_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3334786 - 3335581
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAAAAG
5'SS Class:
major
3'SS Sequence:
TTGCTTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TTGCTTTGAACA
Flanking Amino Acid:
LGEALGNPQEVGPLLNMMIK
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
65.1
40.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
72
0.5
1
69.2
40.7
Minor 5ss
31.1
-2.2
3.2
39.5
46
Minor BPS
60.2
0.32
1.4
69.12
37.2

Associated Gene:

Gene:
HIF1AN
Ensembl Gene ID:
ENSAPLG00000015134
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015773
3329338 - 3335626
6289