Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33497143_33498850_F

Intron Information:

Intron Rank:

145276

Intron Class:

major

Intron Phase:

Intron Coordinates:

33497143 - 33498850

Intron Length:

1708

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

CCTGTGTTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAC

U12 Branch Point Sequence:

TTGTCACTACCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.4

1.02

0.7

87.4

21.4

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

79.5

0.66

0.9

75.9

Minor 5ss

39.3

-1.2

2.9

45.2

Minor BPS

48.5

-0.1

2.2

68.32

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028323

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039072

33496098 - 33500033

3936