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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33542202_33560052_F

Intron Information:

Intron Rank:
147952
Intron Class:
major
Intron Phase:
Intron Coordinates:
33542202 - 33560052
Intron Length:
17851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTCTC
5'SS Class:
major
3'SS Sequence:
ACTCATATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATGCCCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
69.2
41.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
69.6
0.44
0.9
63
37.3
Minor 5ss
37.8
-1.4
3.2
53.5
43.6
Minor BPS
62.2
0.47
1.6
75.79
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029652
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041778
33540063 - 33561759
21697