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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33560183_33561550_F

Intron Information:

Intron Rank:
147949
Intron Class:
major
Intron Phase:
Intron Coordinates:
33560183 - 33561550
Intron Length:
1368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TCTCCTTTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTTTTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76.1
0.59
1
74.7
33.9
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
73.1
0.8
1.3
88.05
30.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029652
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026279
33559828 - 33561759
1932
ENSAPLT00000041778
33540063 - 33561759
21697