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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33573077_33574408_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33573077 - 33574408
Intron Length:
1332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
LQNVGEYFDFGMGRRKVEPE
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
73.6
35.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
90.3
0.91
0.6
84.6
30.3
Minor 5ss
39.6
-1.2
2.7
53.3
37.4
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
TEX36
Ensembl Gene ID:
ENSAPLG00000013143
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013680
33572706 - 33578071
5366