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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33577159_33577954_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33577159 - 33577954
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGGGT
5'SS Class:
major
3'SS Sequence:
CACTATTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATT
Flanking Amino Acid:
SPSAERPGAWFAHVGGCQSQ
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.8
43.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
69.3
0.43
0.9
61.3
39.5
Minor 5ss
30.5
-2.2
3.6
38.1
46.8
Minor BPS
78
0.96
1
86.64
33.8

Associated Gene:

Gene:
TEX36
Ensembl Gene ID:
ENSAPLG00000013143
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013680
33572706 - 33578071
5366