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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33582069_33583113_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33582069 - 33583113
Intron Length:
1045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
TTACTCTCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTAAATTAACC
Flanking Amino Acid:
GSSKKSTPFSSFGMAYDFID
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
78.7
0.64
0.8
74.2
30.7
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
62.9
0.39
1.8
78.01
36.7

Associated Gene:

Gene:
EDRF1
Ensembl Gene ID:
ENSAPLG00000012708
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013259
33581710 - 33602768
21059