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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33583181_33583506_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33583181 - 33583506
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTGCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTATACGGAATG
Flanking Amino Acid:
NDVDVVSDSENIKKLLKIPY
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
70.6
0.46
1.1
71.8
38.4
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
45.7
-0.4
2.3
58.27
43.3

Associated Gene:

Gene:
EDRF1
Ensembl Gene ID:
ENSAPLG00000012708
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013259
33581710 - 33602768
21059