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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33584248_33584660_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
33584248 - 33584660
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTTA
5'SS Class:
weak_major
3'SS Sequence:
AATGTTTTGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CACTTCTTAATG
Flanking Amino Acid:
KAILSKFLYYSINGDGAAQP
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.2
75
38.1
Major BPS
100
1.24
0.5
100
0
Major PPT
71.2
0.48
1.1
70
45
Minor 5ss
60.4
0.35
2.4
73.5
43.2
Minor BPS
64.4
0.31
1.4
59.43
43.1

Associated Gene:

Gene:
EDRF1
Ensembl Gene ID:
ENSAPLG00000012708
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013259
33581710 - 33602768
21059