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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33584821_33586094_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33584821 - 33586094
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCATA
5'SS Class:
major
3'SS Sequence:
GTGCTCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CACTCCTTATCC
Flanking Amino Acid:
LSEDPGASNQGSVPLEPSYI
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1.1
79.2
36.3
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
74.6
0.55
0.9
68.2
37.5
Minor 5ss
39.3
-1.2
2.8
49.4
46.5
Minor BPS
63.5
0.4
1.7
67.22
44.3

Associated Gene:

Gene:
EDRF1
Ensembl Gene ID:
ENSAPLG00000012708
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013259
33581710 - 33602768
21059