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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33586611_33587574_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33586611 - 33587574
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TACTTGCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTTAAATAACA
Flanking Amino Acid:
GRYPAVSLRLRDNNKPINVL
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.8
86.3
23.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74.6
0.55
0.9
66.1
40.5
Minor 5ss
40
-1.1
3.1
57.8
46.8
Minor BPS
52.9
0.09
2
73.72
36.9

Associated Gene:

Gene:
EDRF1
Ensembl Gene ID:
ENSAPLG00000012708
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013259
33581710 - 33602768
21059