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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33588495_33588579_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33588495 - 33588579
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGCTGATTAATG
Flanking Amino Acid:
KEGHTYWLFKASGSDIVKLY
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
84.3
0.77
0.8
81.1
31
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
48.8
-0.2
2.1
56.98
44.7

Associated Gene:

Gene:
EDRF1
Ensembl Gene ID:
ENSAPLG00000012708
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013259
33581710 - 33602768
21059