About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33588911_33589673_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33588911 - 33589673
Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTAAAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CTTTCCTTATTT
Flanking Amino Acid:
KLLDNGRHPQIIASANYMLS
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.2
31
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
61.8
0.27
1.2
64.6
39.6
Minor 5ss
35.5
-1.6
2.9
42.3
38.1
Minor BPS
74.6
0.85
1.6
87.57
38.6

Associated Gene:

Gene:
EDRF1
Ensembl Gene ID:
ENSAPLG00000012708
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013259
33581710 - 33602768
21059