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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33591566_33591677_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33591566 - 33591677
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTGCTTTCAAGG
Flanking Amino Acid:
CRLVLSYVLEGLKSVDSSVK
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.8
38.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
88.6
0.87
0.6
85.2
22.3
Minor 5ss
47.5
-0.2
2.8
64.1
47.4
Minor BPS
46.2
-0.4
1.8
52.08
43

Associated Gene:

Gene:
EDRF1
Ensembl Gene ID:
ENSAPLG00000012708
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013259
33581710 - 33602768
21059