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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33591829_33593311_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33591829 - 33593311
Intron Length:
1483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTGTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATTTACTGATCA
Flanking Amino Acid:
EKQMALFLDKMGSFQKGKHS
Intron Amino Acid Position:
643

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
33.2
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
79.2
0.66
1
72.2
42.7
Minor 5ss
43.6
-0.7
2.9
58.5
40.3
Minor BPS
54.8
0.15
1.9
72.2
39.2

Associated Gene:

Gene:
EDRF1
Ensembl Gene ID:
ENSAPLG00000012708
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013259
33581710 - 33602768
21059