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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33593501_33594512_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33593501 - 33594512
Intron Length:
1012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
TTTTTTCTAATA
Flanking Amino Acid:
RYIKLALQCHDTYCCLCASM
Intron Amino Acid Position:
706

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
75.3
37.4
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
83.9
0.76
0.8
82
28.5
Minor 5ss
40
-1.1
2.8
50
46.2
Minor BPS
66.6
0.52
1.6
79.19
30.8

Associated Gene:

Gene:
EDRF1
Ensembl Gene ID:
ENSAPLG00000012708
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013259
33581710 - 33602768
21059