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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33594714_33595031_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33594714 - 33595031
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
TACTGTTTGACA
Flanking Amino Acid:
HSLHRESSCQVFAWATDLST
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71
35.7
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
85
0.79
0.7
77.9
36.6
Minor 5ss
50.9
0.03
2.4
66.9
44.7
Minor BPS
57
0.21
1.8
66.6
40.3

Associated Gene:

Gene:
EDRF1
Ensembl Gene ID:
ENSAPLG00000012708
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013259
33581710 - 33602768
21059