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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33595251_33596169_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33595251 - 33596169
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAACCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTATTTTTAACC
Flanking Amino Acid:
QAAAVQTERVVSKNVSTTEQ
Intron Amino Acid Position:
846

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
81.8
38.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.2
0.7
0.8
79.2
32.9
Minor 5ss
44.9
-0.5
2.9
58.5
45.8
Minor BPS
74.1
0.73
1.1
75.49
34.5

Associated Gene:

Gene:
EDRF1
Ensembl Gene ID:
ENSAPLG00000012708
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013259
33581710 - 33602768
21059