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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33596394_33597389_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33596394 - 33597389
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGTAT
5'SS Class:
major
3'SS Sequence:
TTACAATCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTTATTTTACAA
Flanking Amino Acid:
SPEEALYYNKAIDYYLRALR
Intron Amino Acid Position:
921

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.1
75.6
36.7
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
69.7
0.44
0.9
63.4
37.9
Minor 5ss
43.9
-0.7
3.3
64.1
47.4
Minor BPS
53.4
0.1
1.7
68.54
37.9

Associated Gene:

Gene:
EDRF1
Ensembl Gene ID:
ENSAPLG00000012708
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013259
33581710 - 33602768
21059