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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33597953_33598928_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33597953 - 33598928
Intron Length:
976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAGTA
5'SS Class:
major
3'SS Sequence:
ATTTGGAGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TGTACCCTATTT
Flanking Amino Acid:
SMYHSCLRNQVGDEHLRKQH
Intron Amino Acid Position:
1024

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
69.7
34.4
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
66.4
0.37
1.1
59.2
45.5
Minor 5ss
40.2
-1.1
3.4
56
48.1
Minor BPS
51.3
0.12
2
74.56
42

Associated Gene:

Gene:
EDRF1
Ensembl Gene ID:
ENSAPLG00000012708
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013259
33581710 - 33602768
21059