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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33599083_33599338_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33599083 - 33599338
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
GTGTCCTTGATT
Flanking Amino Acid:
RVAFAEFQMASQNSSAGKLK
Intron Amino Acid Position:
1075

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
80.5
0.69
0.9
76.8
36.3
Minor 5ss
39.5
-1.2
3
50.5
40
Minor BPS
76.8
0.92
1.1
83.73
37.5

Associated Gene:

Gene:
EDRF1
Ensembl Gene ID:
ENSAPLG00000012708
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013259
33581710 - 33602768
21059