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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33599455_33599605_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33599455 - 33599605
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
GCTTAAATGATA
Flanking Amino Acid:
RKELAAESEQISKDESNTEN
Intron Amino Acid Position:
1114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71.3
40.5
Major BPS
68
0.45
1
57.8
39
Major PPT
84.5
0.78
0.6
80.9
24.3
Minor 5ss
38.1
-1.3
3
49.1
46.7
Minor BPS
43.3
-0.5
1.9
54.29
37.8

Associated Gene:

Gene:
EDRF1
Ensembl Gene ID:
ENSAPLG00000012708
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013259
33581710 - 33602768
21059