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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33599770_33602596_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33599770 - 33602596
Intron Length:
2827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTCAGATTAATA
Flanking Amino Acid:
KLLTSTKKKSGAISEEEITL
Intron Amino Acid Position:
1168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
38.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
87.5
0.84
0.7
84.9
29.9
Minor 5ss
39.1
-1.2
2.8
40.9
45.4
Minor BPS
47
-0.2
2
57.9
41.7

Associated Gene:

Gene:
EDRF1
Ensembl Gene ID:
ENSAPLG00000012708
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013259
33581710 - 33602768
21059