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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33612085_33613294_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33612085 - 33613294
Intron Length:
1210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGGTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTTTGGTTATAG
Flanking Amino Acid:
YVVGKATASLVEEIGLSPQG
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
77.8
0.63
0.9
72.2
38
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
43.5
-0.6
2.6
60.22
47.3

Associated Gene:

Gene:
UROS
Ensembl Gene ID:
ENSAPLG00000012701
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021866
33605790 - 33618796
13007
ENSAPLT00000013219
33605790 - 33620765
14976