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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33618797_33620667_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
33618797 - 33620667
Intron Length:
1871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAA
U12 Branch Point Sequence:
TTGGTTTGAAAC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
65.4
0.38
1.4
75.9
36.3
Major PPT
75.7
0.58
0.8
74.1
31
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
48.8
-0.1
1.6
59.51
39.9

Associated Gene:

Gene:
UROS
Ensembl Gene ID:
ENSAPLG00000012701
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013219
33605790 - 33620765
14976