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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33623459_33624055_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33623459 - 33624055
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTGG
5'SS Class:
major
3'SS Sequence:
TCTTATTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATTT
Flanking Amino Acid:
YSGIKKLLQQLFLKAPVNTA
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.1
62.7
44.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
88.2
0.86
0.7
80.5
36.7
Minor 5ss
38.6
-1.3
3
50.3
45.9
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
BCCIP
Ensembl Gene ID:
ENSAPLG00000012566
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019517
33622478 - 33630982
8505
ENSAPLT00000013097
33621399 - 33630982
9584