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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33631647_33632535_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33631647 - 33632535
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
ACTTCCTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
ACTTCCTCAACA
Flanking Amino Acid:
IRVVSEISPDLFMKLTPQYY
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
73.6
33.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
71.9
0.49
0.9
66.5
33.7
Minor 5ss
42.4
-0.8
2.9
59
45.5
Minor BPS
73.2
0.72
1.5
78.28
38.2

Associated Gene:

Gene:
DHX32
Ensembl Gene ID:
ENSAPLG00000012133
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012650
33631454 - 33655961
24508