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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33632718_33633613_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33632718 - 33633613
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGGAAA
5'SS Class:
major
3'SS Sequence:
TTGCTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
ATTCAATTAAGT
Flanking Amino Acid:
KALLSGYFMHVARDVDGSGN
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
76.9
33.2
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
85.2
0.79
0.7
84.8
30
Minor 5ss
34
-1.8
3.2
44.1
43.8
Minor BPS
49.7
0.06
2.1
74.59
41.4

Associated Gene:

Gene:
DHX32
Ensembl Gene ID:
ENSAPLG00000012133
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012650
33631454 - 33655961
24508