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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33633805_33634842_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33633805 - 33634842
Intron Length:
1038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAG
U12 Branch Point Sequence:
TGTCCTTTAAGC
Flanking Amino Acid:
REAAADSTNQYYSNEKWCRD
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.5
27.8
Major BPS
63.3
0.33
1.6
73.3
39.1
Major PPT
81.8
0.72
0.7
76.5
25.7
Minor 5ss
38.7
-1.3
3.4
53.7
43.8
Minor BPS
64.8
0.44
1.6
72.5
38.5

Associated Gene:

Gene:
DHX32
Ensembl Gene ID:
ENSAPLG00000012133
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012650
33631454 - 33655961
24508