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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33635861_33644815_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33635861 - 33644815
Intron Length:
8955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGATC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTCTCAGGAATT
Flanking Amino Acid:
LGHCDFLSRPAPESLMQALE
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
78.8
35.1
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
78.1
0.63
0.9
80.2
31.9
Minor 5ss
36.9
-1.5
3.3
51.7
45.1
Minor BPS
47.6
-0.1
2.3
73.82
43.2

Associated Gene:

Gene:
DHX32
Ensembl Gene ID:
ENSAPLG00000012133
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012650
33631454 - 33655961
24508