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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33645174_33647241_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33645174 - 33647241
Intron Length:
2068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTATTTAAAG
Flanking Amino Acid:
VIDVGVERRKVYNPRIRADS
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
78
0.63
1
78.8
32.5
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
66.5
0.38
1.7
73.73
38.3

Associated Gene:

Gene:
DHX32
Ensembl Gene ID:
ENSAPLG00000012133
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012650
33631454 - 33655961
24508